TreeWAS – Variant ID: rs12780845

Hospitalization Episode Statistics (HES)

Self-Reported Statistics (SRS)

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Results table

Term	Risk posterior probability	No effect posterior probability	Protective posterior probability
N20.1 Calculus of ureter	0.973	0.027	0.000
N20 Calculus of kidney and ureter	0.738	0.262	0.000
N20.0 Calculus of kidney	0.706	0.294	0.000
N20.2 Calculus of kidney with calculus of ureter	0.508	0.492	0.000
N20.9 Urinary calculus, unspecified	0.416	0.584	0.000
N20-N23 Urolithiasis	0.096	0.904	0.000
N22 Calculus of urinary tract in diseases classified elsewhere	0.069	0.931	0.000
N22.8 Calculus of urinary tract in other diseases classified elsewhere	0.050	0.950	0.000
N22.0 Calculus of urinary tract in schistosomiasis [bilharziasis]	0.050	0.950	0.000
K50.0 Crohn's disease of small intestine	0.000	0.956	0.044
N21 Calculus of lower urinary tract	0.043	0.957	0.000
K50.1 Crohn's disease of large intestine	0.000	0.958	0.042
K50 Crohn's disease [regional enteritis]	0.000	0.959	0.041
K50.8 Other Crohn's disease	0.000	0.966	0.034
N21.9 Calculus of lower urinary tract, unspecified	0.031	0.969	0.000
K50.9 Crohn's disease, unspecified	0.000	0.970	0.030
N23 Unspecified renal colic	0.030	0.970	0.000
N21.8 Other lower urinary tract calculus	0.028	0.972	0.000
N21.1 Calculus in urethra	0.027	0.973	0.000
N81.1 Cystocele	0.024	0.976	0.000
N81.8 Other female genital prolapse	0.023	0.977	0.000
N81.6 Rectocele	0.021	0.979	0.000
D51.9 Vitamin B12 deficiency anaemia, unspecified	0.000	0.979	0.021
N81 Female genital prolapse	0.021	0.979	0.000
N21.0 Calculus in bladder	0.020	0.980	0.000
N81.2 Incomplete uterovaginal prolapse	0.018	0.982	0.000
N81.0 Female urethrocele	0.016	0.984	0.000
D51 Vitamin B12 deficiency anaemia	0.000	0.986	0.014
D51.0 Vitamin B12 deficiency anaemia due to intrinsic factor deficiency	0.000	0.987	0.013
N81.9 Female genital prolapse, unspecified	0.012	0.988	0.000
C16.9 Stomach, unspecified	0.012	0.988	0.000
R22.4 Localised swelling, mass and lump, lower limb	0.000	0.988	0.012
D51.8 Other vitamin B12 deficiency anaemias	0.000	0.989	0.010
D51.3 Other dietary vitamin B12 deficiency anaemia	0.000	0.989	0.010
D51.2 Transcobalamin II deficiency	0.000	0.989	0.010
D51.1 Vitamin B12 deficiency anaemia due to selective vitamin B12 malabsorption with proteinuria	0.000	0.989	0.010
N81.4 Uterovaginal prolapse, unspecified	0.010	0.990	0.000
R22.3 Localised swelling, mass and lump, upper limb	0.000	0.992	0.008
N81.5 Vaginal enterocele	0.008	0.992	0.000
Z35.5 Supervision of elderly primigravida	0.008	0.992	0.000
J39.2 Other diseases of pharynx	0.000	0.992	0.008
R22 Localised swelling, mass and lump of skin and subcutaneous tissue	0.000	0.993	0.007
C16 Malignant neoplasm of stomach	0.007	0.993	0.000
K14.0 Glossitis	0.000	0.993	0.007
R22.7 Localised swelling, mass and lump, multiple sites	0.000	0.994	0.006
C16.5 Lesser curvature of stomach, unspecified	0.006	0.994	0.000
C16.2 Body of stomach	0.006	0.994	0.000
C16.1 Fundus of stomach	0.006	0.994	0.000
C16.3 Pyloric antrum	0.006	0.994	0.000
N31.8 Other neuromuscular dysfunction of bladder	0.005	0.995	0.000
C16.8 Overlapping lesion of stomach	0.005	0.995	0.000
N31.2 Flaccid neuropathic bladder, not elsewhere classified	0.005	0.995	0.000
C16.4 Pylorus	0.005	0.995	0.000
K50-K52 Noninfective enteritis and colitis	0.000	0.995	0.005
R22.1 Localised swelling, mass and lump, neck	0.000	0.995	0.005
Q85.0 Neurofibromatosis (nonmalignant)	0.005	0.995	0.000
Q50-Q56 Congenital malformations of genital organs	0.005	0.995	0.000
Q85 Phakomatoses, not elsewhere classified	0.005	0.995	0.000
Q51 Congenital malformations of uterus and cervix	0.005	0.995	0.000
J91 Pleural effusion in conditions classified elsewhere	0.005	0.995	0.000
T79.3 Post-traumatic wound infection, not elsewhere classified	0.000	0.995	0.005
Q54.0 Hypospadias, balanic	0.005	0.995	0.000
Z93.0 Tracheostomy status	0.000	0.995	0.005
Q54 Hypospadias	0.005	0.995	0.000
C16.6 Greater curvature of stomach, unspecified	0.004	0.995	0.000
R22.9 Localised swelling, mass and lump, unspecified	0.000	0.996	0.004
Q80-Q89 Other congenital malformations	0.004	0.996	0.000
Q52 Other congenital malformations of female genitalia	0.004	0.996	0.000
J38.7 Other diseases of larynx	0.004	0.996	0.000
Q51.2 Other doubling of uterus	0.004	0.996	0.000
Q51.1 Doubling of uterus with doubling of cervix and vagina	0.004	0.996	0.000
Q85.9 Phakomatosis, unspecified	0.004	0.996	0.000
Q51.3 Bicornate uterus	0.004	0.996	0.000
Z35.0 Supervision of pregnancy with history of infertility	0.004	0.996	0.000
Q85.8 Other phakomatoses, not elsewhere classified	0.004	0.996	0.000
N31 Neuromuscular dysfunction of bladder, not elsewhere classified	0.004	0.996	0.000
Chapter XVII Congenital malformations, deformations and chromosomal abnormalities	0.004	0.996	0.000
Q50 Congenital malformations of ovaries, Fallopian tubes and broad ligaments	0.004	0.996	0.000
Q87 Other specified congenital malformation syndromes affecting multiple systems	0.004	0.996	0.000
R23.3 Spontaneous ecchymoses	0.000	0.996	0.004
Q38-Q45 Other congenital malformations of the digestive system	0.004	0.996	0.000
Q52.5 Fusion of labia	0.004	0.996	0.000
Q61.3 Polycystic kidney, unspecified	0.004	0.996	0.000
Q44 Congenital malformations of gallbladder, bile ducts and liver	0.004	0.996	0.000
K25.3 Acute without haemorrhage or perforation	0.004	0.996	0.000
Q55 Other congenital malformations of male genital organs	0.004	0.996	0.000
T79.7 Traumatic subcutaneous emphysema	0.000	0.996	0.004
G40.6 Grand mal seizures, unspecified (with or without petit mal)	0.000	0.996	0.004
Q51.8 Other congenital malformations of uterus and cervix	0.004	0.996	0.000
Q83 Congenital malformations of breast	0.004	0.996	0.000
T79 Certain early complications of trauma, not elsewhere classified	0.000	0.996	0.004
R23.8 Other and unspecified skin changes	0.000	0.996	0.004
Q56 Indeterminate sex and pseudohermaphroditism	0.004	0.996	0.000
Q85.1 Tuberous sclerosis	0.004	0.996	0.000
Q51.9 Congenital malformation of uterus and cervix, unspecified	0.004	0.996	0.000
Q51.7 Congenital fistulae between uterus and digestive and urinary tracts	0.004	0.996	0.000
Q51.6 Embryonic cyst of cervix	0.004	0.996	0.000
Q51.5 Agenesis and aplasia of cervix	0.004	0.996	0.000
Q51.4 Unicornate uterus	0.004	0.996	0.000
Q51.0 Agenesis and aplasia of uterus	0.004	0.996	0.000
Q44.6 Cystic disease of liver	0.004	0.996	0.000
I98.2 Oesophageal varices in diseases classified elsewhere	0.004	0.996	0.000
C34.3 Lower lobe, bronchus or lung	0.000	0.996	0.004
T84.5 Infection and inflammatory reaction due to internal joint prosthesis	0.000	0.996	0.004
Z35 Supervision of high-risk pregnancy	0.004	0.996	0.000
R26.3 Immobility	0.000	0.996	0.004
Q54.9 Hypospadias, unspecified	0.003	0.996	0.000
Q54.8 Other hypospadias	0.003	0.996	0.000
Q54.4 Congenital chordee	0.003	0.996	0.000
Q54.3 Hypospadias, perineal	0.003	0.996	0.000
Q54.2 Hypospadias, penoscrotal	0.003	0.996	0.000
Q87.1 Congenital malformation syndromes predominantly associated with short stature	0.003	0.996	0.000
Q52.4 Other congenital malformations of vagina	0.003	0.996	0.000
R23 Other skin changes	0.000	0.996	0.004
Q38 Other congenital malformations of tongue, mouth and pharynx	0.003	0.996	0.000
K25.7 Chronic without haemorrhage or perforation	0.003	0.997	0.000
Q40 Other congenital malformations of upper alimentary tract	0.003	0.997	0.000
Q86 Congenital malformation syndromes due to known exogenous causes, not elsewhere classified	0.003	0.997	0.000
Q84 Other congenital malformations of integument	0.003	0.997	0.000
Q81 Epidermolysis bullosa	0.003	0.997	0.000
Q80 Congenital ichthyosis	0.003	0.997	0.000
L29.9 Pruritus, unspecified	0.000	0.997	0.003
Q87.4 Marfan's syndrome	0.003	0.997	0.000
Q52.9 Congenital malformation of female genitalia, unspecified	0.003	0.997	0.000
Q52.8 Other specified congenital malformations of female genitalia	0.003	0.997	0.000
Q52.7 Other congenital malformations of vulva	0.003	0.997	0.000
Q52.6 Congenital malformation of clitoris	0.003	0.997	0.000
Q52.3 Imperforate hymen	0.003	0.997	0.000
Q52.2 Congenital rectovaginal fistula	0.003	0.997	0.000
Q52.1 Doubling of vagina	0.003	0.997	0.000
Q52.0 Congenital absence of vagina	0.003	0.997	0.000
M13.09 Polyarthritis, unspecified (Site unspecified)	0.000	0.997	0.003
Q83.8 Other congenital malformations of breast	0.003	0.997	0.000
Q60-Q64 Congenital malformations of the urinary system	0.003	0.997	0.000
Q83.3 Accessory nipple	0.003	0.997	0.000
Q45 Other congenital malformations of digestive system	0.003	0.997	0.000
Q55.6 Other congenital malformations of penis	0.003	0.997	0.000
Q65-Q79 Congenital malformations and deformations of the musculoskeletal system	0.003	0.997	0.000
Q50.4 Embryonic cyst of Fallopian tube	0.003	0.997	0.000
Q76 Congenital malformations of spine and bony thorax	0.003	0.997	0.000
J39 Other diseases of upper respiratory tract	0.000	0.997	0.003
C16.0 Cardia	0.003	0.997	0.000
T79.5 Traumatic anuria	0.000	0.997	0.003
M65.91 Synovitis and tenosynovitis, unspecified (Shoulder region)	0.003	0.997	0.000
Q50.5 Embryonic cyst of broad ligament	0.003	0.997	0.000
T79.8 Other early complications of trauma	0.000	0.997	0.003
Q76.4 Other congenital malformations of spine, not associated with scoliosis	0.003	0.997	0.000
N31.0 Uninhibited neuropathic bladder, not elsewhere classified	0.003	0.997	0.000
Q44.5 Other congenital malformations of bile ducts	0.003	0.997	0.000
Q54.1 Hypospadias, penile	0.003	0.997	0.000
Z35.8 Supervision of other high-risk pregnancies	0.003	0.997	0.000
Q30-Q34 Congenital malformations of the respiratory system	0.003	0.997	0.000
Q50.6 Other congenital malformatons of Fallopian tube and broad ligament	0.003	0.997	0.000
Q50.3 Other congenital malformations of ovary	0.003	0.997	0.000
Q50.2 Congenital torsion of ovary	0.003	0.997	0.000
Q50.1 Developmental ovarian cyst	0.003	0.997	0.000
Q50.0 Congenital absence of ovary	0.003	0.997	0.000
Q87.5 Other congenital malformation syndromes with other skeletal changes	0.003	0.997	0.000
Q87.3 Congenital malformation syndromes involving early overgrowth	0.003	0.997	0.000
Q87.2 Congenital malformation syndromes predominantly involving limbs	0.003	0.997	0.000
Q00-Q07 Congenital malformations of the nervous system	0.003	0.997	0.000
Q87.8 Other specified congenital malformation syndromes, not elsewhere classified	0.003	0.997	0.000
Q87.0 Congenital malformation syndromes predominantly affecting facial appearance	0.003	0.997	0.000
Q42 Congenital absence, atresia and stenosis of large intestine	0.003	0.997	0.000
Q41 Congenital absence, atresia and stenosis of small intestine	0.003	0.997	0.000
Q53 Undescended testicle	0.003	0.997	0.000
R23.1 Pallor	0.000	0.997	0.003
Q62 Congenital obstructive defects of renal pelvis and congenital malformations of ureter	0.003	0.997	0.000
M65.97 Synovitis and tenosynovitis, unspecified (Ankle and foot)	0.003	0.997	0.000
Q90-Q99 Chromosomal abnormalities, not elsewhere classified	0.003	0.997	0.000
Q40.1 Congenital hiatus hernia	0.003	0.997	0.000
Q35-Q37 Cleft lip and cleft palate	0.003	0.997	0.000
Q61 Cystic kidney disease	0.003	0.997	0.000
S12.10 Fracture of second cervical vertebra (closed)	0.000	0.997	0.003
Q44.7 Other congenital malformations of liver	0.003	0.997	0.000
Q44.4 Choledochal cyst	0.003	0.997	0.000
Q44.3 Congenital stenosis and stricture of bile ducts	0.003	0.997	0.000
Q44.2 Atresia of bile ducts	0.003	0.997	0.000
Q44.1 Other congenital malformations of gallbladder	0.003	0.997	0.000
Q44.0 Agenesis, aplasia and hypoplasia of gallbladder	0.003	0.997	0.000
Q55.9 Congenital malformation of male genital organ, unspecified	0.003	0.997	0.000
Q55.8 Other specified congenital malformations of male genital organs	0.003	0.997	0.000
Q55.5 Congenital absence and aplasia of penis	0.003	0.997	0.000
Q55.4 Other congenital malformations of vas deferens, epididymis, seminal vesicles and prostate	0.003	0.997	0.000
Q55.3 Atresia of vas deferens	0.003	0.997	0.000
Q55.1 Hypoplasia of testis and scrotum	0.003	0.997	0.000
Q55.0 Absence and aplasia of testis	0.003	0.997	0.000
J39.0 Retropharyngeal and parapharyngeal abscess	0.000	0.997	0.003
Q83.9 Congenital malformation of breast, unspecified	0.003	0.997	0.000
Q83.2 Absent nipple	0.003	0.997	0.000
Q83.0 Congenital absence of breast with absent nipple	0.003	0.997	0.000
T79.9 Unspecified early complication of trauma	0.000	0.997	0.003
T79.4 Traumatic shock	0.000	0.997	0.003
T79.2 Traumatic secondary and recurrent haemorrhage	0.000	0.997	0.003
T79.1 Fat embolism (traumatic)	0.000	0.997	0.003
T79.0 Air embolism (traumatic)	0.000	0.997	0.003
Q64 Other congenital malformations of urinary system	0.003	0.997	0.000
Q38.7 Pharyngeal pouch	0.003	0.997	0.000
Q56.4 Indeterminate sex, unspecified	0.003	0.997	0.000
Q56.3 Pseudohermaphroditism, unspecified	0.003	0.997	0.000
Q56.2 Female pseudohermaphroditism, not elsewhere classified	0.003	0.997	0.000
Q56.1 Male pseudohermaphroditism, not elsewhere classified	0.003	0.997	0.000
Q56.0 Hermaphroditism, not elsewhere classified	0.003	0.997	0.000
N31.1 Reflex neuropathic bladder, not elsewhere classified	0.003	0.997	0.000
K52.3 Indeterminate colitis	0.000	0.997	0.003
Q67 Congenital musculoskeletal deformities of head, face, spine and chest	0.003	0.997	0.000
Q38.1 Ankyloglossia	0.003	0.997	0.000
M65.9 Synovitis and tenosynovitis, unspecified	0.003	0.997	0.000
Q45.8 Other specified congenital malformations of digestive system	0.003	0.997	0.000
Z35.7 Supervision of high-risk pregnancy due to social problems	0.003	0.997	0.000
Z35.6 Supervision of very young primigravida	0.003	0.997	0.000
Z35.3 Supervision of pregnancy with history of insufficient antenatal care	0.003	0.997	0.000
K52 Other non-infective gastro-enteritis and colitis	0.000	0.997	0.003
Q10-Q18 Congenital malformations of eye, ear, face and neck	0.003	0.997	0.000
Q76.0 Spina bifida occulta	0.003	0.997	0.000
M65.93 Synovitis and tenosynovitis, unspecified (Forearm)	0.003	0.997	0.000
Z35.9 Supervision of high-risk pregnancy, unspecified	0.003	0.997	0.000
Q82 Other congenital malformations of skin	0.003	0.997	0.000
Q62.1 Atresia and stenosis of ureter	0.003	0.997	0.000
I25.5 Ischaemic cardiomyopathy	0.003	0.997	0.000
Q40.3 Congenital malformation of stomach, unspecified	0.003	0.997	0.000
Q74 Other congenital malformations of limb(s)	0.003	0.997	0.000
N75.1 Abscess of Bartholin's gland	0.003	0.997	0.000
K52.0 Gastro-enteritis and colitis due to radiation	0.000	0.997	0.003
Q38.8 Other congenital malformations of pharynx	0.003	0.997	0.000
Q38.6 Other congenital malformations of mouth	0.003	0.997	0.000
Q38.5 Congenital malformations of palate, not elsewhere classified	0.003	0.997	0.000
Q38.4 Congenital malformations of salivary glands and ducts	0.003	0.997	0.000
Q38.3 Other congenital malformations of tongue	0.003	0.997	0.000
Q38.2 Macroglossia	0.003	0.997	0.000
Q38.0 Congenital malformations of lips, not elsewhere classified	0.003	0.997	0.000
Q67.4 Other congenital deformities of skull, face and jaw	0.003	0.997	0.000
Q03 Congenital hydrocephalus	0.003	0.997	0.000
H57.8 Other specified disorders of eye and adnexa	0.003	0.997	0.000
Q43 Other congenital malformations of intestine	0.003	0.997	0.000
Q40.9 Congenital malformation of upper alimentary tract, unspecified	0.003	0.997	0.000
Q40.8 Other specified congenital malformations of upper alimentary tract	0.003	0.997	0.000
Q40.0 Congenital hypertrophic pyloric stenosis	0.003	0.997	0.000
Q55.2 Other congenital malformations of testis and scrotum	0.003	0.997	0.000
Q80.9 Congenital ichthyosis, unspecified	0.003	0.997	0.000
Q80.8 Other congenital ichthyosis	0.003	0.997	0.000
Q80.4 Harlequin foetus	0.003	0.997	0.000
Q80.3 Congenital bullous ichthyosiform erythroderma	0.003	0.997	0.000
Q80.2 Lamellar ichthyosis	0.003	0.997	0.000
Q80.1 X-linked ichthyosis	0.003	0.997	0.000
Q80.0 Ichthyosis vulgaris	0.003	0.997	0.000
Q81.9 Epidermolysis bullosa, unspecified	0.003	0.997	0.000
Q81.8 Other epidermolysis bullosa	0.003	0.997	0.000
Q81.2 Epidermolysis bullosa dystrophica	0.003	0.997	0.000
Q81.1 Epidermolysis bullosa letalis	0.003	0.997	0.000
Q81.0 Epidermolysis bullosa simplex	0.003	0.997	0.000
Q84.9 Congenital malformation of integument, unspecified	0.003	0.997	0.000
Q84.8 Other specified congenital malformations of integument	0.003	0.997	0.000
Q84.6 Other congenital malformations of nails	0.003	0.997	0.000
Q84.5 Enlarged and hypertrophic nails	0.003	0.997	0.000
Q84.4 Congenital leukonychia	0.003	0.997	0.000
Q84.3 Anonychia	0.003	0.997	0.000
Q84.2 Other congenital malformations of hair	0.003	0.997	0.000
Q84.1 Congenital morphological disturbances of hair, not elsewhere classified	0.003	0.997	0.000
Q84.0 Congenital alopecia	0.003	0.997	0.000
Q86.8 Other congenital malformation syndromes due to known exogenous causes	0.003	0.997	0.000
Q86.2 Dysmorphism due to warfarin	0.003	0.997	0.000
Q86.1 Foetal hydantoin syndrome	0.003	0.997	0.000
Q86.0 Foetal alcohol syndrome (dysmorphic)	0.003	0.997	0.000
Q89 Other congenital malformations, not elsewhere classified	0.003	0.997	0.000
M65.95 Synovitis and tenosynovitis, unspecified (Pelvic region and thigh)	0.003	0.997	0.000
Q62.2 Congenital megaloureter	0.003	0.997	0.000
Q07 Other congenital malformations of nervous system	0.003	0.997	0.000
Q45.9 Congenital malformation of digestive system, unspecified	0.002	0.997	0.000
Q45.2 Congenital pancreatic cyst	0.002	0.997	0.000
Q45.1 Annular pancreas	0.002	0.997	0.000
Q45.0 Agenesis, aplasia and hypoplasia of pancreas	0.002	0.997	0.000
Q64.7 Other congenital malformations of bladder and urethra	0.003	0.997	0.000
Q77 Osteochondrodysplasia with defects of growth of tubular bones and spine	0.003	0.997	0.000
Q40.2 Other specified congenital malformations of stomach	0.003	0.997	0.000
Q76.1 Klippel-Feil syndrome	0.003	0.997	0.000
R23.4 Changes in skin texture	0.000	0.997	0.003
Q76.9 Congenital malformation of bony thorax, unspecified	0.002	0.997	0.000
Q76.8 Other congenital malformations of bony thorax	0.002	0.997	0.000
Q76.7 Congenital malformation of sternum	0.002	0.997	0.000
Q76.6 Other congenital malformations of ribs	0.002	0.997	0.000
Q76.3 Congenital scoliosis due to congenital bony malformation	0.002	0.997	0.000
Q76.2 Congenital spondylolisthesis	0.002	0.997	0.000
Z35.4 Supervision of pregnancy with grand multiparity	0.003	0.997	0.000
Q39 Congenital malformations of oesophagus	0.003	0.997	0.000
Q75 Other congenital malformations of skull and face bones	0.003	0.997	0.000
Q73 Reduction defects of unspecified limb	0.003	0.997	0.000
Q72 Reduction defects of lower limb	0.003	0.997	0.000
Q71 Reduction defects of upper limb	0.003	0.997	0.000
Q70 Syndactyly	0.003	0.997	0.000
Q69 Polydactyly	0.003	0.997	0.000
Q68 Other congenital musculoskeletal deformities	0.003	0.997	0.000
Q45.3 Other congenital malformations of pancreas and pancreatic duct	0.002	0.997	0.000
R23.0 Cyanosis	0.000	0.997	0.003
K52.1 Toxic gastro-enteritis and colitis	0.000	0.997	0.003
L91.0 Keloid scar	0.000	0.997	0.003
M45.X9 Ankylosing spondylitis (Site unspecified)	0.000	0.997	0.003
L72.0 Epidermal cyst	0.000	0.997	0.003
Q76.5 Cervical rib	0.002	0.997	0.000
H57.1 Ocular pain	0.003	0.997	0.000
J39.3 Upper respiratory tract hypersensitivity reaction, site unspecified	0.000	0.997	0.002
J39.1 Other abscess of pharynx	0.000	0.997	0.002
C49.9 Connective and soft tissue, unspecified	0.003	0.997	0.000
J44.8 Other specified chronic obstructive pulmonary disease	0.000	0.997	0.003
Q12 Congenital lens malformations	0.002	0.997	0.000
Q06 Other congenital malformations of spinal cord	0.002	0.997	0.000
Q01 Encephalocele	0.002	0.997	0.000
Q00 Anencephaly and similar malformations	0.002	0.997	0.000
Q02 Microcephaly	0.002	0.997	0.000
Q34 Other congenital malformations of respiratory system	0.002	0.997	0.000
Q33 Congenital malformations of lung	0.002	0.997	0.000
Q32 Congenital malformations of trachea and bronchus	0.002	0.997	0.000
Q31 Congenital malformations of larynx	0.002	0.997	0.000
Q30 Congenital malformations of nose	0.002	0.997	0.000
M65.90 Synovitis and tenosynovitis, unspecified (Multiple sites)	0.002	0.997	0.000
Q41.9 Congenital absence, atresia and stenosis of small intestine, part unspecified	0.002	0.997	0.000
Q41.8 Congenital absence, atresia and stenosis of other specified parts of small intestine	0.002	0.997	0.000
Q41.2 Congenital absence, atresia and stenosis of ileum	0.002	0.997	0.000
Q41.1 Congenital absence, atresia and stenosis of jejunum	0.002	0.997	0.000
Q41.0 Congenital absence, atresia and stenosis of duodenum	0.002	0.997	0.000
Q42.9 Congenital absence, atresia and stenosis of large intestine, part unspecified	0.002	0.997	0.000
Q42.8 Congenital absence, atresia and stenosis of other parts of large intestine	0.002	0.997	0.000
Q42.3 Congenital absence, atresia and stenosis of anus without fistula	0.002	0.997	0.000
Q42.2 Congenital absence, atresia and stenosis of anus with fistula	0.002	0.997	0.000
Q42.1 Congenital absence, atresia and stenosis of rectum without fistula	0.002	0.997	0.000
Q42.0 Congenital absence, atresia and stenosis of rectum with fistula	0.002	0.997	0.000
H57 Other disorders of eye and adnexa	0.003	0.997	0.000
Q03.0 Malformations of aqueduct of Sylvius	0.002	0.997	0.000
Q53.9 Undescended testicle, unspecified	0.002	0.997	0.000
Q53.2 Undescended testicle, bilateral	0.002	0.997	0.000
Q53.0 Ectopic testis	0.002	0.997	0.000
Q04 Other congenital malformations of brain	0.002	0.997	0.000
Q62.8 Other congenital malformations of ureter	0.002	0.997	0.000
Q62.7 Congenital vesico-uretero-renal reflux	0.002	0.997	0.000
Q62.6 Malposition of ureter	0.002	0.997	0.000
Q62.4 Agenesis of ureter	0.002	0.997	0.000
Q62.3 Other obstructive defects of renal pelvis and ureter	0.002	0.997	0.000
Q62.0 Congenital hydronephrosis	0.002	0.997	0.000
Q64.3 Other atresia and stenosis of urethra and bladder neck	0.002	0.997	0.000
Q83.1 Accessory breast	0.002	0.997	0.000
Q65 Congenital deformities of hip	0.002	0.997	0.000
Q99 Other chromosome abnormalities, not elsewhere classified	0.002	0.997	0.000
Q97 Other sex chromosome abnormalities, female phenotype, not elsewhere classified	0.002	0.997	0.000
Q95 Balanced rearrangements and structural markers, not elsewhere classified	0.002	0.997	0.000
Q93 Monosomies and deletions from the autosomes, not elsewhere classified	0.002	0.997	0.000
Q92 Other trisomies and partial trisomies of the autosomes, not elsewhere classified	0.002	0.997	0.000
Q91 Edwards' syndrome and Patau's syndrome	0.002	0.997	0.000
Q61.9 Cystic kidney disease, unspecified	0.002	0.997	0.000
Q36 Cleft lip	0.002	0.997	0.000
Q35 Cleft palate	0.002	0.997	0.000
Q78 Other osteochondrodysplasias	0.002	0.997	0.000
Q96 Turner's syndrome	0.002	0.997	0.000
K35.3 Acute appendicitis with localized peritonitis	0.002	0.998	0.000
Q61.8 Other cystic kidney diseases	0.002	0.998	0.000
Q61.1 Polycystic kidney, infantile type	0.002	0.998	0.000
Q90 Down's syndrome	0.002	0.998	0.000
H55 Nystagmus and other irregular eye movements	0.002	0.998	0.000
Q64.9 Congenital malformation of urinary system, unspecified	0.002	0.998	0.000
Q64.8 Other specified congenital malformations of urinary system	0.002	0.998	0.000
Q64.6 Congenital diverticulum of bladder	0.002	0.998	0.000
Q64.5 Congenital absence of bladder and urethra	0.002	0.998	0.000
Q64.4 Malformation of urachus	0.002	0.998	0.000
Q64.2 Congenital posterior urethral valves	0.002	0.998	0.000
Q64.1 Exstrophy of urinary bladder	0.002	0.998	0.000
Q64.0 Epispadias	0.002	0.998	0.000
Q67.6 Pectus excavatum	0.002	0.998	0.000
K25 Gastric ulcer	0.002	0.998	0.000
Q98 Other sex chromosome abnormalities, male phenotype, not elsewhere classified	0.002	0.998	0.000
Q61.2 Polycystic kidney, adult type	0.002	0.998	0.000
D41.0 Kidney	0.000	0.998	0.002
Q67.8 Other congenital deformities of chest	0.002	0.998	0.000
Q67.7 Pectus carinatum	0.002	0.998	0.000
Q67.3 Plagiocephaly	0.002	0.998	0.000
Q67.2 Dolichocephaly	0.002	0.998	0.000
Q67.1 Compression facies	0.002	0.998	0.000
Q67.0 Facial asymmetry	0.002	0.998	0.000
M65.94 Synovitis and tenosynovitis, unspecified (Hand)	0.002	0.998	0.000
Q74.0 Other congenital malformations of upper limb(s), including shoulder girdle	0.002	0.998	0.000
Z35.1 Supervision of pregnancy with history of abortive outcome	0.002	0.998	0.000
M65.98 Synovitis and tenosynovitis, unspecified (Other)	0.002	0.998	0.000
Q74.1 Congenital malformation of knee	0.002	0.998	0.000
Q16 Congenital malformations of ear causing impairment of hearing	0.002	0.998	0.000
Q15 Other congenital malformations of eye	0.002	0.998	0.000
Q13 Congenital malformations of anterior segment of eye	0.002	0.998	0.000
Q11 Anophthalmos, microphthalmos and macrophthalmos	0.002	0.998	0.000
Q37 Cleft palate with cleft lip	0.002	0.998	0.000
R20-R23 Symptoms and signs involving the skin and subcutaneous tissue	0.000	0.998	0.002
Q61.4 Renal dysplasia	0.002	0.998	0.000
Q62.5 Duplication of ureter	0.002	0.998	0.000
Q82.2 Mastocytosis	0.002	0.998	0.000
T79.6 Traumatic ischaemia of muscle	0.000	0.998	0.002
T82.1 Mechanical complication of cardiac electronic device	0.002	0.998	0.000
Q07.0 Arnold-Chiari syndrome	0.002	0.998	0.000
C49.1 Connective and soft tissue of upper limb, including shoulder	0.002	0.998	0.000
Q82.9 Congenital malformation of skin, unspecified	0.002	0.998	0.000
Q82.4 Ectodermal dysplasia (anhidrotic)	0.002	0.998	0.000
Q82.3 Incontinentia pigmenti	0.002	0.998	0.000
Q82.1 Xeroderma pigmentosum	0.002	0.998	0.000
T88.7 Unspecified adverse effect of drug or medicament	0.002	0.998	0.000
C81.9 Hodgkin's disease, unspecified	0.002	0.998	0.000
Q43.8 Other specified congenital malformations of intestine	0.002	0.998	0.000
Q17 Other congenital malformations of ear	0.002	0.998	0.000
C49.0 Connective and soft tissue of head, face and neck	0.002	0.998	0.000
I65.3 Occlusion and stenosis of multiple and bilateral precerebral arteries	0.002	0.998	0.000
I97.2 Postmastectomy lymphoedema syndrome	0.002	0.998	0.000
Q12.0 Congenital cataract	0.002	0.998	0.000
Q65.1 Congenital dislocation of hip, bilateral	0.002	0.998	0.000
Q74.9 Unspecified congenital malformation of limb(s)	0.002	0.998	0.000
Q74.8 Other specified congenital malformations of limb(s)	0.002	0.998	0.000
Q74.3 Arthrogryposis multiplex congenita	0.002	0.998	0.000
G40.3 Generalised idiopathic epilepsy and epileptic syndromes	0.000	0.998	0.002
J39.9 Disease of upper respiratory tract, unspecified	0.000	0.998	0.002
M65.99 Synovitis and tenosynovitis, unspecified (Site unspecified)	0.002	0.998	0.000
Q03.9 Congenital hydrocephalus, unspecified	0.002	0.998	0.000
Q03.8 Other congenital hydrocephalus	0.002	0.998	0.000
Q03.1 Atresia of foramina of Magendie and Luschka	0.002	0.998	0.000
Q67.5 Congenital deformity of spine	0.002	0.998	0.000
Q43.7 Persistent cloaca	0.002	0.998	0.000
Q43.6 Congenital fistula of rectum and anus	0.002	0.998	0.000
Q43.5 Ectopic anus	0.002	0.998	0.000
Q43.4 Duplication of intestine	0.002	0.998	0.000
Q43.2 Other congenital functional disorders of colon	0.002	0.998	0.000
Q89.9 Congenital malformation, unspecified	0.002	0.998	0.000
Q89.8 Other specified congenital malformations	0.002	0.998	0.000
Q89.7 Multiple congenital malformations, not elsewhere classified	0.002	0.998	0.000
Q89.4 Conjoined twins	0.002	0.998	0.000
Q89.3 Situs inversus	0.002	0.998	0.000
Q89.1 Congenital malformations of adrenal gland	0.002	0.998	0.000
Q89.0 Congenital malformations of spleen	0.002	0.998	0.000
Q43.1 Hirschsprung's disease	0.002	0.998	0.000
Q74.2 Other congenital malformations of lower limb(s), including pelvic girdle	0.002	0.998	0.000
Q10 Congenital malformations of eyelid, lachrymal apparatus and orbit	0.002	0.998	0.000
Q66 Congenital deformities of feet	0.002	0.998	0.000
Q43.9 Congenital malformation of intestine, unspecified	0.002	0.998	0.000
Q14 Congenital malformations of posterior segment of eye	0.002	0.998	0.000
Q07.9 Congenital malformation of nervous system, unspecified	0.002	0.998	0.000
Q07.8 Other specified congenital malformations of nervous system	0.002	0.998	0.000
Q77.4 Achondroplasia	0.002	0.998	0.000
I98 Other disorders of circulatory system in diseases classified elsewhere	0.002	0.998	0.000
D50-D53 Nutritional anaemias	0.000	0.998	0.002
J39.8 Other specified diseases of upper respiratory tract	0.000	0.998	0.002
Q77.9 Osteochondrodysplasia with defects of growth of tubular bones and spine, unspecified	0.002	0.998	0.000
Q77.8 Other osteochondrodysplasia with defects of growth of tubular bones and spine	0.002	0.998	0.000
Q77.7 Spondyloepiphyseal dysplasia	0.002	0.998	0.000
Q77.6 Chondroectodermal dysplasia	0.002	0.998	0.000
Q77.5 Diastrophic dysplasia	0.002	0.998	0.000
Q77.3 Chondrodysplasia punctata	0.002	0.998	0.000
Q77.2 Short rib syndrome	0.002	0.998	0.000
Q77.1 Thanatophoric short stature	0.002	0.998	0.000
Q77.0 Achondrogenesis	0.002	0.998	0.000
Q39.9 Congenital malformation of oesophagus, unspecified	0.002	0.998	0.000
Q39.8 Other congenital malformations of oesophagus	0.002	0.998	0.000
Q39.5 Congenital dilatation of oesophagus	0.002	0.998	0.000
Q39.3 Congenital stenosis and stricture of oesophagus	0.002	0.998	0.000
Q39.2 Congenital tracheooesophageal fistula without atresia	0.002	0.998	0.000
Q39.1 Atresia of oesophagus with tracheooesophageal fistula	0.002	0.998	0.000
Q39.0 Atresia of oesophagus without fistula	0.002	0.998	0.000
Q68.8 Other specified congenital musculoskeletal deformities	0.002	0.998	0.000
Q68.5 Congenital bowing of long bones of leg, unspecified	0.002	0.998	0.000
Q68.4 Congenital bowing of tibia and fibula	0.002	0.998	0.000
Q68.3 Congenital bowing of femur	0.002	0.998	0.000
Q68.2 Congenital deformity of knee	0.002	0.998	0.000
Q68.1 Congenital deformity of hand	0.002	0.998	0.000
Q68.0 Congenital deformity of sternocleidomastoid muscle	0.002	0.998	0.000
Q69.9 Polydactyly, unspecified	0.002	0.998	0.000
Q69.2 Accessory toe(s)	0.002	0.998	0.000
Q69.1 Accessory thumb(s)	0.002	0.998	0.000
Q69.0 Accessory finger(s)	0.002	0.998	0.000
Q70.9 Syndactyly, unspecified	0.002	0.998	0.000
Q70.4 Polysyndactyly	0.002	0.998	0.000
Q70.3 Webbed toes	0.002	0.998	0.000
Q70.2 Fused toes	0.002	0.998	0.000
Q70.1 Webbed fingers	0.002	0.998	0.000
Q70.0 Fused fingers	0.002	0.998	0.000
Q71.9 Reduction defect of upper limb, unspecified	0.002	0.998	0.000
Q71.8 Other reduction defects of upper limb(s)	0.002	0.998	0.000
Q71.6 Lobster-claw hand	0.002	0.998	0.000
Q71.5 Longitudinal reduction defect of ulna	0.002	0.998	0.000
Q71.4 Longitudinal reduction defect of radius	0.002	0.998	0.000
Q71.3 Congenital absence of hand and finger(s)	0.002	0.998	0.000
Q71.2 Congenital absence of both forearm and hand	0.002	0.998	0.000
Q71.1 Congenital absence of upper arm and forearm with hand present	0.002	0.998	0.000
Q71.0 Congenital complete absence of upper limb(s)	0.002	0.998	0.000
Q72.9 Reduction defect of lower limb, unspecified	0.002	0.998	0.000
Q72.8 Other reduction defects of lower limb(s)	0.002	0.998	0.000
Q72.7 Split foot	0.002	0.998	0.000
Q72.6 Longitudinal reduction defect of fibula	0.002	0.998	0.000
Q72.5 Longitudinal reduction defect of tibia	0.002	0.998	0.000
Q72.4 Longitudinal reduction defect of femur	0.002	0.998	0.000
Q72.3 Congenital absence of foot and toe(s)	0.002	0.998	0.000
Q72.2 Congenital absence of both lower leg and foot	0.002	0.998	0.000
Q72.1 Congenital absence of thigh and lower leg with foot present	0.002	0.998	0.000
Q72.0 Congenital complete absence of lower limb(s)	0.002	0.998	0.000
Q73.8 Other reduction defects of unspecified limb(s)	0.002	0.998	0.000
Q73.1 Phocomelia, unspecified limb(s)	0.002	0.998	0.000
Q73.0 Congenital absence of unspecified limb(s)	0.002	0.998	0.000
Q75.9 Congenital malformation of skull and face bones, unspecified	0.002	0.998	0.000
Q75.8 Other specified congenital malformations of skull and face bones	0.002	0.998	0.000
Q75.5 Oculomandibular dysostosis	0.002	0.998	0.000
Q75.4 Mandibulofacial dysostosis	0.002	0.998	0.000

This table lists the top 500 terms ordered by p(effect).

The full results table can be downloaded from this page.

The TreeWAS Database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This research has been conducted using the UK Biobank Resource (application number 10625). This work uses data provided by patients and collected by the NHS as part of their care and support.

This research has been conducted with the support of the Wellcome Trust (100956/Z/13/Z and 090532/Z/09/Z and 100308/Z/12/Z), the Danish National Research Foundation, Takeda, the Medical Research Council (MC_UU_12010/3), the Oak Foundation (OCAY-15-520), the National Institute for Health Research (NIHR) Oxford Biomedical Research Centre (BRC), the Wellcome Trust/Royal Society (204290/Z/16/Z) and the Li Ka Shing Foundation.

Variant-specific associations