TreeWAS – [N91] Absent, scanty and rare menstruation

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Diagnostic term associations

Hospitalization Episode Statistics (`HES`)

N91

Absent, scanty and rare menstruation

Parent term	N80-N98 Noninflammatory disorders of female genital tract
Nested terms	N91.0 Primary amenorrhoea N91.1 Secondary amenorrhoea N91.2 Amenorrhoea, unspecified N91.3 Primary oligomenorrhoea N91.4 Secondary oligomenorrhoea N91.5 Oligomenorrhoea, unspecified

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Variant effects

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Genome-wide Chromosomes: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22

Results table

Variant	Risk posterior probability	No effect posterior probability	Protective posterior probability
rs117929870 lBF = `16.9839` Chr`12` : `108,524,849`	0.716	0.284	0.000
rs117605016 lBF = `28.0976` Chr`12` : `129,614,385`	0.716	0.284	0.000
rs117437287 lBF = `16.5299` Chr`12` : `23,389,839`	0.714	0.285	0.000
rs144700679 lBF = `7.09223` Chr`12` : `115,468,959`	0.714	0.286	0.000
rs34574480 lBF = `13.3586` Chr`12` : `115,307,567`	0.713	0.286	0.000
rs2279695 lBF = `6.13321` Chr`12` : `117,154,262`	0.709	0.291	0.000
rs78221103 lBF = `16.6479` Chr`12` : `104,562,673`	0.708	0.291	0.000
rs117091826 lBF = `24.5799` Chr`12` : `112,629,713`	0.706	0.293	0.000
rs5742692 lBF = `2.17819` Chr`12` : `102,799,598`	0.706	0.294	0.000
rs215398 lBF = `19.4313` Chr`12` : `47,767,134`	0.700	0.300	0.000
rs79680354 lBF = `22.0763` Chr`12` : `119,361,070`	0.697	0.303	0.000
rs117139804 lBF = `18.4888` Chr`12` : `116,233,671`	0.690	0.310	0.000
rs73141422 lBF = `22.399` Chr`12` : `83,882,469`	0.685	0.315	0.000
rs17102257 lBF = `14.6206` Chr`12` : `54,126,061`	0.672	0.328	0.000
rs61756485 lBF = `16.787` Chr`12` : `99,020,125`	0.659	0.341	0.000
rs188610 lBF = `2.31323` Chr`12` : `313,839`	0.652	0.348	0.000
rs143136847 lBF = `1.54314` Chr`12` : `82,748,339`	0.639	0.361	0.000
rs181609621 lBF = `1.56948` Chr`12` : `32,810,759`	0.632	0.368	0.000
rs2292303 lBF = `0.924716` Chr`12` : `102,513,531`	0.630	0.370	0.000
rs2417373 lBF = `14.5305` Chr`12` : `14,744,468`	0.624	0.376	0.000
rs1291621 lBF = `15.6995` Chr`12` : `46,340,821`	0.581	0.419	0.000
rs74910874 lBF = `2.61067` Chr`12` : `67,086,810`	0.578	0.422	0.000
rs182057829 lBF = `2.49683` Chr`12` : `97,412,327`	0.550	0.450	0.000
rs6580622 lBF = `15.5075` Chr`12` : `47,936,778`	0.543	0.456	0.000
rs77821460 lBF = `20.1742` Chr`12` : `20,274,936`	0.526	0.474	0.000
rs149104283 lBF = `2.00778` Chr`12` : `21,083,862`	0.511	0.488	0.000
rs12582659 lBF = `4.82974` Chr`12` : `76,064,528`	0.483	0.517	0.000
rs117492744 lBF = `13.2788` Chr`12` : `29,747,631`	0.477	0.522	0.000
rs12425131 lBF = `16.2355` Chr`12` : `82,984,879`	0.474	0.526	0.000
rs117636037 lBF = `18.8537` Chr`12` : `38,519,375`	0.468	0.532	0.000
rs118079879 lBF = `5.09035` Chr`12` : `41,713,306`	0.468	0.532	0.000
rs112742247 lBF = `13.3959` Chr`12` : `85,030,619`	0.446	0.554	0.000
rs75311705 lBF = `0.456159` Chr`12` : `125,714,596`	0.412	0.588	0.000
rs78008978 lBF = `13.3787` Chr`12` : `77,282,680`	0.396	0.603	0.000
rs5744807 lBF = `13.1175` Chr`12` : `133,243,621`	0.378	0.622	0.000
rs3809128 lBF = `2.10909` Chr`12` : `56,709,919`	0.353	0.647	0.000
rs76409154 lBF = `20.1612` Chr`12` : `85,692,134`	0.321	0.679	0.000
rs114453043 lBF = `22.0948` Chr`12` : `25,461,756`	0.303	0.696	0.000
rs11175593 lBF = `2.45774` Chr`12` : `40,601,940`	0.284	0.716	0.000
rs7307123 lBF = `21.9581` Chr`12` : `54,524,397`	0.281	0.719	0.000
rs4149639 lBF = `0.234732` Chr`12` : `6,442,001`	0.280	0.720	0.000
rs3794288 lBF = `0.216509` Chr`12` : `2,789,221`	0.262	0.738	0.000
rs7294372 lBF = `0.932637` Chr`12` : `114,637,423`	0.260	0.740	0.000
rs76796201 lBF = `14.1948` Chr`12` : `23,091,755`	0.229	0.771	0.000
rs78851502 lBF = `8.34221` Chr`12` : `40,811,944`	0.172	0.827	0.000
rs73217910 lBF = `14.853` Chr`12` : `118,450,865`	0.159	0.841	0.000
rs117863495 lBF = `14.7593` Chr`12` : `129,432,374`	0.153	0.847	0.000
rs76242156 lBF = `19.5711` Chr`12` : `65,043,774`	0.151	0.849	0.000
rs10506821 lBF = `13.2804` Chr`12` : `80,496,923`	0.131	0.869	0.000
rs11115322 lBF = `13.8059` Chr`12` : `83,019,188`	0.127	0.873	0.000
rs116938548 lBF = `0.178688` Chr`12` : `4,808,251`	0.122	0.878	0.000
rs141480969 lBF = `0.733874` Chr`12` : `62,496,278`	0.114	0.886	0.000
rs144288546 lBF = `0.146461` Chr`12` : `129,069,682`	0.113	0.887	0.000
rs117629949 lBF = `14.77` Chr`12` : `25,021,224`	0.108	0.892	0.000
rs74911677 lBF = `20.5271` Chr`12` : `122,015,993`	0.106	0.894	0.000
rs55783344 lBF = `0.0642843` Chr`12` : `121,432,299`	0.104	0.896	0.000
rs12371484 lBF = `19.7008` Chr`12` : `111,872,722`	0.103	0.897	0.000
rs12370770 lBF = `24.384` Chr`12` : `112,277,084`	0.100	0.899	0.000
rs79918060 lBF = `17.5524` Chr`12` : `58,407,669`	0.094	0.905	0.000
rs12422544 lBF = `1.68441` Chr`12` : `40,528,432`	0.092	0.908	0.000
rs117624816 lBF = `14.1981` Chr`12` : `18,210,143`	0.091	0.908	0.000
rs79015790 lBF = `14.8688` Chr`12` : `128,700,249`	0.090	0.910	0.000
rs78294386 lBF = `14.58` Chr`12` : `107,963,652`	0.083	0.917	0.000
rs78321382 lBF = `14.0322` Chr`12` : `17,070,922`	0.067	0.933	0.000
rs76001134 lBF = `19.3411` Chr`12` : `23,209,903`	0.062	0.938	0.000
rs17813263 lBF = `23.117` Chr`12` : `69,481,381`	0.061	0.939	0.000
rs9332958 lBF = `5.25634` Chr`12` : `16,519,263`	0.058	0.942	0.000
rs73164250 lBF = `17.0593` Chr`12` : `84,624,334`	0.056	0.944	0.000
rs16906714 lBF = `0.0571485` Chr`12` : `30,860,557`	0.055	0.945	0.000
rs35729753 lBF = `17.3029` Chr`12` : `66,672,379`	0.050	0.950	0.000
rs12322695 lBF = `0.0399753` Chr`12` : `117,199,414`	0.047	0.953	0.000
rs189010983 lBF = `0.0387565` Chr`12` : `84,086,176`	0.040	0.959	0.000
rs2608700 lBF = `16.0704` Chr`12` : `41,884,414`	0.039	0.961	0.000
rs199710891 lBF = `5.87106` Chr`12` : `14,273,071`	0.035	0.965	0.000
rs80002652 lBF = `18.6612` Chr`12` : `107,437,422`	0.031	0.969	0.000
rs73313995 lBF = `22.0276` Chr`12` : `33,622,807`	0.030	0.969	0.000
rs188255132 lBF = `0.0230843` Chr`12` : `81,723,188`	0.030	0.970	0.000
rs4238083 lBF = `14.8083` Chr`12` : `42,924,769`	0.028	0.972	0.000
rs80160299 lBF = `15.0308` Chr`12` : `66,159,224`	0.027	0.972	0.000
rs117409850 lBF = `13.4266` Chr`12` : `106,057,582`	0.027	0.972	0.000
rs183825572 lBF = `0.0255777` Chr`12` : `101,264,845`	0.027	0.973	0.000
rs75626916 lBF = `11.7941` Chr`12` : `108,663,870`	0.025	0.975	0.000
rs144148493 lBF = `0.015726` Chr`12` : `87,360,221`	0.024	0.976	0.000
rs73201485 lBF = `11.279` Chr`12` : `114,791,319`	0.022	0.978	0.000
rs11180992 lBF = `0.0137073` Chr`12` : `41,940,664`	0.021	0.979	0.000
rs77628219 lBF = `0.0129624` Chr`12` : `87,404,130`	0.021	0.979	0.000
rs187039407 lBF = `0.0120709` Chr`12` : `87,341,774`	0.021	0.979	0.000
rs117761474 lBF = `15.8826` Chr`12` : `113,029,356`	0.020	0.980	0.000
rs80132640 lBF = `11.0963` Chr`12` : `49,426,460`	0.019	0.981	0.000
rs75289085 lBF = `19.4964` Chr`12` : `18,147,653`	0.017	0.983	0.000
rs11044722 lBF = `15.4222` Chr`12` : `19,781,710`	0.016	0.984	0.000
rs77662038 lBF = `13.6756` Chr`12` : `83,497,229`	0.015	0.985	0.000
rs79476482 lBF = `14.9329` Chr`12` : `76,084,550`	0.015	0.985	0.000
rs142494129 lBF = `0.0386533` Chr`12` : `95,161,353`	0.014	0.986	0.000
rs4594074 lBF = `0.0140546` Chr`12` : `41,032,092`	0.014	0.986	0.000
rs76859191 lBF = `0.57087` Chr`12` : `114,545,274`	0.013	0.987	0.000
rs11564258 lBF = `0.0464349` Chr`12` : `40,792,300`	0.013	0.987	0.000
rs1235153 lBF = `9.04692` Chr`12` : `48,110,325`	0.012	0.987	0.000
rs11611673 lBF = `13.5862` Chr`12` : `121,451,150`	0.011	0.988	0.000
rs34934130 lBF = `11.9795` Chr`12` : `121,502,913`	0.011	0.989	0.000
rs187293782 lBF = `0.0145963` Chr`12` : `76,157,356`	0.011	0.989	0.000
rs17443266 lBF = `15.2354` Chr`12` : `19,169,453`	0.011	0.989	0.000
rs187035304 lBF = `0.00715419` Chr`12` : `87,229,742`	0.010	0.990	0.000
rs139236384 lBF = `0.00601029` Chr`12` : `82,550,025`	0.010	0.990	0.000
rs117802803 lBF = `21.4181` Chr`12` : `22,796,804`	0.000	0.990	0.010
rs1388585 lBF = `0.675794` Chr`12` : `40,531,691`	0.000	0.990	0.010
rs11608709 lBF = `15.4681` Chr`12` : `99,302,859`	0.009	0.991	0.000
rs2722223 lBF = `24.9818` Chr`12` : `90,233,876`	0.009	0.991	0.000
rs10506418 lBF = `0.0272495` Chr`12` : `61,488,772`	0.009	0.991	0.000
rs73040424 lBF = `7.46879` Chr`12` : `5,665,454`	0.009	0.991	0.000
rs118113273 lBF = `22.5923` Chr`12` : `128,300,100`	0.008	0.992	0.000
rs11108227 lBF = `16.4201` Chr`12` : `96,134,001`	0.008	0.992	0.000
rs117303215 lBF = `9.21583` Chr`12` : `129,627,812`	0.008	0.992	0.000
rs116877397 lBF = `30.7668` Chr`12` : `121,162,996`	0.007	0.992	0.000
rs183244340 lBF = `0.0050197` Chr`12` : `87,005,576`	0.007	0.993	0.000
rs117029533 lBF = `21.9889` Chr`12` : `66,632,067`	0.007	0.993	0.000
rs12423247 lBF = `0.921356` Chr`12` : `96,858,362`	0.007	0.993	0.000
rs74565952 lBF = `16.1651` Chr`12` : `71,112,797`	0.007	0.993	0.000
rs12321507 lBF = `16.2879` Chr`12` : `96,134,818`	0.006	0.994	0.000
rs17432871 lBF = `6.59959` Chr`12` : `121,542,128`	0.006	0.994	0.000
rs17126180 lBF = `0.00493889` Chr`12` : `52,263,956`	0.000	0.994	0.005
rs76582905 lBF = `0.00276703` Chr`12` : `130,466,631`	0.005	0.995	0.000
rs7307889 lBF = `7.08994` Chr`12` : `5,981,353`	0.005	0.995	0.000
rs187353341 lBF = `19.0434` Chr`12` : `121,557,376`	0.005	0.995	0.000
rs183032784 lBF = `0.00474184` Chr`12` : `118,257,214`	0.005	0.995	0.000
rs11065791 lBF = `12.9532` Chr`12` : `111,460,000`	0.005	0.995	0.000
rs55922880 lBF = `0.00435799` Chr`12` : `115,617,641`	0.005	0.995	0.000
rs59753639 lBF = `4.25806` Chr`12` : `25,140,690`	0.004	0.995	0.000
rs3951439 lBF = `0.0044521` Chr`12` : `51,727,596`	0.000	0.996	0.004
rs76177788 lBF = `0.0120066` Chr`12` : `86,544,239`	0.004	0.996	0.000
rs2733283 lBF = `17.1055` Chr`12` : `41,935,977`	0.004	0.996	0.000
rs56360506 lBF = `10.2114` Chr`12` : `53,222,800`	0.004	0.996	0.000
rs1040026 lBF = `0.00233431` Chr`12` : `71,210,678`	0.003	0.996	0.000
rs941184 lBF = `0.00357459` Chr`12` : `54,114,158`	0.003	0.996	0.000
rs10773971 lBF = `-0.0157233` Chr`12` : `1,740,171`	0.003	0.996	0.000
rs7137521 lBF = `0.00252492` Chr`12` : `126,734,269`	0.003	0.997	0.000
rs183160876 lBF = `0.00279977` Chr`12` : `82,463,439`	0.003	0.997	0.000
rs7309269 lBF = `13.6679` Chr`12` : `7,757,834`	0.003	0.997	0.000
rs76775795 lBF = `13.6666` Chr`12` : `115,385,431`	0.003	0.997	0.000
rs190909796 lBF = `0.00805551` Chr`12` : `80,474,682`	0.003	0.997	0.000
rs117458579 lBF = `15.4218` Chr`12` : `15,351,989`	0.003	0.997	0.000
rs73114523 lBF = `14.6366` Chr`12` : `54,602,032`	0.003	0.997	0.000
rs182328274 lBF = `0.0032004` Chr`12` : `107,667,802`	0.002	0.997	0.000
rs75876943 lBF = `15.0045` Chr`12` : `86,555,845`	0.003	0.997	0.000
rs12230170 lBF = `6.64286` Chr`12` : `129,247,383`	0.003	0.997	0.000
rs34637584 lBF = `0.00195999` Chr`12` : `40,734,202`	0.002	0.997	0.000
rs17466626 lBF = `0.0332799` Chr`12` : `40,760,631`	0.002	0.997	0.000
rs115720202 lBF = `18.7627` Chr`12` : `89,746,581`	0.002	0.997	0.000
rs11609031 lBF = `16.3836` Chr`12` : `99,307,725`	0.002	0.997	0.000
rs12582852 lBF = `14.3759` Chr`12` : `3,315,933`	0.002	0.997	0.000
rs139660738 lBF = `0.00949875` Chr`12` : `95,185,188`	0.000	0.998	0.002
rs1520223 lBF = `0.00239145` Chr`12` : `102,726,338`	0.002	0.998	0.000
rs117759274 lBF = `14.7453` Chr`12` : `23,131,855`	0.002	0.998	0.000
rs117626015 lBF = `0.00164872` Chr`12` : `41,624,795`	0.002	0.998	0.000
rs4149018 lBF = `0.00161931` Chr`12` : `21,291,561`	0.002	0.998	0.000
rs142054194 lBF = `0.0063675` Chr`12` : `86,864,240`	0.002	0.998	0.000
rs181947843 lBF = `0.00335065` Chr`12` : `108,547,387`	0.002	0.998	0.000
rs17040357 lBF = `13.7026` Chr`12` : `108,665,316`	0.002	0.998	0.000
rs140444490 lBF = `0.00607512` Chr`12` : `86,860,976`	0.002	0.998	0.000
rs1653608 lBF = `16.5227` Chr`12` : `121,706,733`	0.002	0.998	0.000
rs188024766 lBF = `0.00093228` Chr`12` : `101,353,534`	0.002	0.998	0.000
rs76450399 lBF = `14.1937` Chr`12` : `9,143,781`	0.002	0.998	0.000
rs12813285 lBF = `22.3499` Chr`12` : `68,206,219`	0.002	0.998	0.000
rs76270203 lBF = `1.90441` Chr`12` : `113,936,996`	0.002	0.998	0.000
rs192256367 lBF = `0.00111823` Chr`12` : `107,648,405`	0.001	0.998	0.000
rs11837432 lBF = `16.9657` Chr`12` : `2,170,893`	0.001	0.998	0.000
rs77649004 lBF = `14.247` Chr`12` : `96,135,916`	0.001	0.998	0.000
rs186879571 lBF = `0.0106335` Chr`12` : `128,652,831`	0.001	0.998	0.000
rs76595471 lBF = `13.0273` Chr`12` : `80,228,443`	0.001	0.999	0.000
rs79002142 lBF = `11.7979` Chr`12` : `85,143,591`	0.001	0.999	0.000
rs181697701 lBF = `0.00035088` Chr`12` : `107,611,050`	0.001	0.999	0.000
rs499368 lBF = `-0.00108169` Chr`12` : `320,920`	0.001	0.999	0.000
rs73045775 lBF = `23.3857` Chr`12` : `8,674,905`	0.001	0.999	0.000
rs184699315 lBF = `0.00049337` Chr`12` : `71,650,779`	0.001	0.999	0.000
rs140785266 lBF = `0.00305033` Chr`12` : `86,195,923`	0.001	0.999	0.000
rs678069 lBF = `-0.0175837` Chr`12` : `53,102,196`	0.000	0.999	0.001
rs7974425 lBF = `0.00058097` Chr`12` : `60,735,173`	0.001	0.999	0.000
rs17096606 lBF = `36.0164` Chr`12` : `38,532,743`	0.000	0.999	0.001
rs187986843 lBF = `15.061` Chr`12` : `69,080,770`	0.001	0.999	0.000
rs1386003 lBF = `12.5875` Chr`12` : `13,213,682`	0.001	0.999	0.000
rs276000 lBF = `0.00046952` Chr`12` : `59,849,677`	0.001	0.999	0.000
rs79944777 lBF = `10.9261` Chr`12` : `73,011,538`	0.001	0.999	0.000
rs11048674 lBF = `0.0003458` Chr`12` : `26,912,719`	0.001	0.999	0.000
rs11836164 lBF = `-0.0593139` Chr`12` : `26,446,625`	0.001	0.999	0.000
rs4767631 lBF = `0.951209` Chr`12` : `118,311,743`	0.000	0.999	0.001
rs147538848 lBF = `0.0001142` Chr`12` : `31,466,613`	0.001	0.999	0.000
rs17019682 lBF = `-0.0237381` Chr`12` : `92,305,270`	0.000	0.999	0.001
rs312273 lBF = `-0.0125877` Chr`12` : `41,247,742`	0.001	0.999	0.000
rs10850408 lBF = `0.1807` Chr`12` : `115,380,393`	0.001	0.999	0.000
rs147616082 lBF = `0.00023933` Chr`12` : `67,181,789`	0.001	0.999	0.000
rs17108344 lBF = `-0.00155388` Chr`12` : `70,954,464`	0.001	0.999	0.000
rs2384550 lBF = `-0.0871248` Chr`12` : `115,352,731`	0.001	0.999	0.000
rs11105468 lBF = `0.758357` Chr`12` : `90,328,833`	0.001	0.999	0.000
rs12423382 lBF = `0.0000625` Chr`12` : `16,179,371`	0.001	0.999	0.000
rs11066280 lBF = `0.00004018` Chr`12` : `112,817,783`	0.001	0.999	0.001
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rs7953929 lBF = `5.0262` Chr`12` : `123,758,235`	0.000	1.000	0.000
rs1727313 lBF = `4.61449` Chr`12` : `123,640,853`	0.000	1.000	0.000
rs7138803 lBF = `0.715138` Chr`12` : `50,247,468`	0.000	1.000	0.000
rs1495377 lBF = `0.109341` Chr`12` : `71,577,101`	0.000	1.000	0.000
rs2657880 lBF = `0.0100386` Chr`12` : `56,863,770`	0.000	1.000	0.000
rs2657879 lBF = `0.00817662` Chr`12` : `56,865,338`	0.000	1.000	0.000
rs1463605 lBF = `0.00786643` Chr`12` : `30,113,883`	0.000	1.000	0.000
rs9652020 lBF = `-0.0163675` Chr`12` : `40,547,379`	0.000	1.000	0.000
rs10774021 lBF = `-0.0190185` Chr`12` : `349,298`	0.000	1.000	0.000
rs2638315 lBF = `-0.0199053` Chr`12` : `56,865,056`	0.000	1.000	0.000
rs3741920 lBF = `-0.0454186` Chr`12` : `6,938,872`	0.000	1.000	0.000
rs1494508 lBF = `-0.0496594` Chr`12` : `65,842,258`	0.000	1.000	0.000
rs12580100 lBF = `-0.0579956` Chr`12` : `56,439,209`	0.000	1.000	0.000
rs673078 lBF = `-0.0673754` Chr`12` : `118,791,441`	0.000	1.000	0.000
rs10444533 lBF = `-0.0702925` Chr`12` : `107,229,705`	0.000	1.000	0.000
rs2290720 lBF = `-0.0843582` Chr`12` : `101,687,043`	0.000	1.000	0.000
rs12229663 lBF = `-0.0927172` Chr`12` : `71,249,996`	0.000	1.000	0.000
rs73211928 lBF = `9.06643` Chr`12` : `118,039,876`	0.000	1.000	0.000
rs10849931 lBF = `7.46303` Chr`12` : `111,753,808`	0.000	1.000	0.000
rs4420311 lBF = `3.01293` Chr`12` : `27,984,190`	0.000	1.000	0.000
rs57514780 lBF = `1.0288` Chr`12` : `69,397,789`	0.000	1.000	0.000
rs1485395 lBF = `0.672699` Chr`12` : `53,995,077`	0.000	1.000	0.000
rs3782181 lBF = `0.616058` Chr`12` : `88,953,561`	0.000	1.000	0.000
rs4474514 lBF = `0.605549` Chr`12` : `88,953,959`	0.000	1.000	0.000
rs11062987 lBF = `0.437239` Chr`12` : `4,173,126`	0.000	1.000	0.000
rs7965584 lBF = `0.0830301` Chr`12` : `90,305,779`	0.000	1.000	0.000
rs1316952 lBF = `0.075008` Chr`12` : `124,399,550`	0.000	1.000	0.000
rs7304057 lBF = `0.0675331` Chr`12` : `131,352,562`	0.000	1.000	0.000
rs11059919 lBF = `0.0618` Chr`12` : `129,289,190`	0.000	1.000	0.000
rs12423712 lBF = `0.0543282` Chr`12` : `125,033,933`	0.000	1.000	0.000
rs6486986 lBF = `0.0328778` Chr`12` : `19,801,595`	0.000	1.000	0.000
rs77724872 lBF = `0.0190681` Chr`12` : `104,754,500`	0.000	1.000	0.000
rs887304 lBF = `0.00426339` Chr`12` : `3,757,548`	0.000	1.000	0.000
rs11057405 lBF = `-0.00458737` Chr`12` : `122,781,897`	0.000	1.000	0.000
rs61021925 lBF = `-0.0234956` Chr`12` : `122,863,659`	0.000	1.000	0.000
rs1569019 lBF = `-0.0293583` Chr`12` : `131,576,191`	0.000	1.000	0.000
rs1558324 lBF = `-0.0401239` Chr`12` : `6,289,219`	0.000	1.000	0.000
rs34102591 lBF = `-0.0466761` Chr`12` : `124,480,801`	0.000	1.000	0.000
rs2630772 lBF = `-0.0468769` Chr`12` : `54,426,521`	0.000	1.000	0.000
rs1994090 lBF = `-0.0517336` Chr`12` : `40,428,561`	0.000	1.000	0.000
rs7295246 lBF = `-0.0554447` Chr`12` : `43,967,677`	0.000	1.000	0.000
rs4761097 lBF = `-0.0568683` Chr`12` : `85,187,511`	0.000	1.000	0.000
rs11069062 lBF = `-0.06` Chr`12` : `119,163,079`	0.000	1.000	0.000
rs4026608 lBF = `-0.0644565` Chr`12` : `66,394,664`	0.000	1.000	0.000
rs2629751 lBF = `-0.0841816` Chr`12` : `104,421,808`	0.000	1.000	0.000
rs7976059 lBF = `-0.0919263` Chr`12` : `52,251,272`	0.000	1.000	0.000
rs2579103 lBF = `-0.0995777` Chr`12` : `90,633,507`	0.000	1.000	0.000
rs412533 lBF = `23.2298` Chr`12` : `52,863,213`	0.000	1.000	0.000
rs12308914 lBF = `12.8877` Chr`12` : `104,633,842`	0.000	1.000	0.000
rs11175997 lBF = `12.485` Chr`12` : `66,401,444`	0.000	1.000	0.000
rs10774740 lBF = `10.5603` Chr`12` : `114,666,202`	0.000	1.000	0.000
rs117291831 lBF = `7.6951` Chr`12` : `127,045,967`	0.000	1.000	0.000
rs4767364 lBF = `7.03532` Chr`12` : `112,521,448`	0.000	1.000	0.000
rs77103806 lBF = `6.36663` Chr`12` : `23,021,423`	0.000	1.000	0.000
rs7299341 lBF = `5.99167` Chr`12` : `83,224,324`	0.000	1.000	0.000
rs11362332 lBF = `5.87161` Chr`12` : `27,993,726`	0.000	1.000	0.000
rs1005902 lBF = `5.81327` Chr`12` : `112,667,675`	0.000	1.000	0.000
rs10773087 lBF = `5.56414` Chr`12` : `124,878,404`	0.000	1.000	0.000
rs1531343 lBF = `3.25594` Chr`12` : `66,174,894`	0.000	1.000	0.000
rs7980799 lBF = `0.806158` Chr`12` : `33,576,990`	0.000	1.000	0.000
rs11610782 lBF = `0.575475` Chr`12` : `126,196,289`	0.000	1.000	0.000
rs11180559 lBF = `0.335449` Chr`12` : `75,920,285`	0.000	1.000	0.000
rs2293052 lBF = `0.0849252` Chr`12` : `117,715,620`	0.000	1.000	0.000
rs11058488 lBF = `0.0657132` Chr`12` : `126,551,205`	0.000	1.000	0.000
rs6581612 lBF = `0.0439212` Chr`12` : `65,534,624`	0.000	1.000	0.000
rs3891355 lBF = `0.0189252` Chr`12` : `106,950,695`	0.000	1.000	0.000
rs186586221 lBF = `0.00794423` Chr`12` : `75,574,323`	0.000	1.000	0.000
rs11169838 lBF = `-0.00194819` Chr`12` : `39,253,108`	0.000	1.000	0.000
rs117483990 lBF = `-0.00680357` Chr`12` : `90,224,714`	0.000	1.000	0.000
rs2641530 lBF = `-0.0176772` Chr`12` : `52,384,811`	0.000	1.000	0.000
rs2965667 lBF = `-0.019105` Chr`12` : `17,444,733`	0.000	1.000	0.000
rs144850704 lBF = `-0.0207004` Chr`12` : `118,062,074`	0.000	1.000	0.000
rs312274 lBF = `-0.0216138` Chr`12` : `41,246,280`	0.000	1.000	0.000
rs2302729 lBF = `-0.0248168` Chr`12` : `2,783,972`	0.000	1.000	0.000
rs11064768 lBF = `-0.0269596` Chr`12` : `119,818,509`	0.000	1.000	0.000
rs216013 lBF = `-0.0280808` Chr`12` : `2,729,632`	0.000	1.000	0.000
rs9943753 lBF = `-0.0370871` Chr`12` : `109,840,940`	0.000	1.000	0.000
rs4759375 lBF = `-0.0438723` Chr`12` : `123,796,238`	0.000	1.000	0.000
rs7301016 lBF = `-0.0493217` Chr`12` : `62,886,123`	0.000	1.000	0.000
rs2120991 lBF = `-0.0505507` Chr`12` : `54,270,228`	0.000	1.000	0.000
rs1534618 lBF = `-0.0574493` Chr`12` : `119,303,195`	0.000	1.000	0.000
rs4149081 lBF = `-0.0609822` Chr`12` : `21,378,021`	0.000	1.000	0.000
rs16923647 lBF = `-0.0674625` Chr`12` : `21,451,395`	0.000	1.000	0.000
rs786425 lBF = `-0.0675889` Chr`12` : `124,085,502`	0.000	1.000	0.000
rs1596370 lBF = `-0.0676892` Chr`12` : `54,275,266`	0.000	1.000	0.000
rs1053051 lBF = `-0.0793726` Chr`12` : `107,367,225`	0.000	1.000	0.000
rs517020 lBF = `-0.0823316` Chr`12` : `129,462,703`	0.000	1.000	0.000
rs9943849 lBF = `-0.0909417` Chr`12` : `69,370,756`	0.000	1.000	0.000
rs10773568 lBF = `-0.12648` Chr`12` : `129,186,190`	0.000	1.000	0.000
Affx-35293052 lBF = `21.9991` Chr`12` : `52,880,371`	0.000	1.000	0.000
rs17528414 lBF = `17.7734` Chr`12` : `32,352,055`	0.000	1.000	0.000
rs117138325 lBF = `14.5458` Chr`12` : `74,850,188`	0.000	1.000	0.000
rs17722134 lBF = `13.8489` Chr`12` : `72,401,694`	0.000	1.000	0.000
rs10843013 lBF = `12.9097` Chr`12` : `28,025,196`	0.000	1.000	0.000
rs111825271 lBF = `10.5466` Chr`12` : `66,344,706`	0.000	1.000	0.000
rs61944384 lBF = `10.148` Chr`12` : `111,952,215`	0.000	1.000	0.000
rs7974772 lBF = `6.73048` Chr`12` : `112,332,283`	0.000	1.000	0.000
rs2285810 lBF = `5.79517` Chr`12` : `112,699,540`	0.000	1.000	0.000
rs2261181 lBF = `5.79392` Chr`12` : `66,212,318`	0.000	1.000	0.000

This table lists the top 500 variants ordered by p(effect).

The full results table can be downloaded from this page.

Variant clusters with highest protective effect

(posterior probability > 0.05)

Variant clusters with highest risk effect

(posterior probability > 0.05)

Cluster X0109

log Bayes Factor = 257.685

contains 11 variants

0.9165

Cluster X0059

log Bayes Factor = 922.497

contains 26 variants

0.8762

Cluster X0047

log Bayes Factor = 378.621

contains 14 variants

0.8738

Cluster X0106

log Bayes Factor = 980.916

contains 30 variants

0.8705

Cluster X0072

log Bayes Factor = 1189.98

contains 37 variants

0.8449

Cluster X0290

log Bayes Factor = 333.908

contains 13 variants

0.8082

Cluster X0275

log Bayes Factor = 219.726

contains 10 variants

0.8013

Cluster X0293

log Bayes Factor = 169.051

contains 7 variants

0.8006

Cluster X0156

log Bayes Factor = 226.954

contains 9 variants

0.7916

Cluster X0306

log Bayes Factor = 24.0492

contains 2 variants

0.7820

Cluster X0320

log Bayes Factor = 110.964

contains 6 variants

0.7620

Cluster X0068

log Bayes Factor = 127.774

contains 6 variants

0.7537

Cluster X0073

log Bayes Factor = 785.614

contains 25 variants

0.7515

Cluster X0054

log Bayes Factor = 197.338

contains 9 variants

0.7502

Cluster X0258

log Bayes Factor = 104.851

contains 6 variants

0.7457

Cluster X0300

log Bayes Factor = 109.684

contains 3 variants

0.7451

Cluster X0268

log Bayes Factor = 213.591

contains 8 variants

0.7169

Cluster X0176

log Bayes Factor = 407.797

contains 14 variants

0.7169

Cluster X0161

log Bayes Factor = 609.219

contains 20 variants

0.7169

Cluster X0178

log Bayes Factor = 225.6

contains 9 variants

0.7169

Cluster X0067

log Bayes Factor = 179.381

contains 8 variants

0.7169

Cluster X0120

log Bayes Factor = 79.6695

contains 4 variants

0.7169

Cluster X0192

log Bayes Factor = 402.511

contains 14 variants

0.7169

Cluster X0139

log Bayes Factor = 304.555

contains 10 variants

0.7169

Cluster X0159

log Bayes Factor = 152.327

contains 7 variants

0.7169

Cluster X0194

log Bayes Factor = 189.9

contains 5 variants

0.7169

Cluster X0189

log Bayes Factor = 149.681

contains 5 variants

0.7168

Cluster X0037

log Bayes Factor = 171.712

contains 6 variants

0.7168

Cluster X0132

log Bayes Factor = 267.393

contains 11 variants

0.7058

Cluster X0205

log Bayes Factor = 674.183

contains 18 variants

0.6867

Cluster X0045

log Bayes Factor = 446.264

contains 16 variants

0.6833

Cluster X0012

log Bayes Factor = 112.432

contains 5 variants

0.6695

Cluster X0248

log Bayes Factor = 254.854

contains 10 variants

0.6635

Cluster X0100

log Bayes Factor = 730.252

contains 26 variants

0.6032

Cluster X0032

log Bayes Factor = 255.737

contains 12 variants

0.5675

Cluster X0087

log Bayes Factor = 894.58

contains 26 variants

0.5506

Cluster X0129

log Bayes Factor = 195.809

contains 7 variants

0.5400

Cluster X0094

log Bayes Factor = 562.956

contains 18 variants

0.5196

Cluster X0044

log Bayes Factor = 1165.44

contains 34 variants

0.4478

Cluster X0154

log Bayes Factor = 282.084

contains 12 variants

0.3925

Cluster X0063

log Bayes Factor = 107.557

contains 5 variants

0.3584

Cluster X0035

log Bayes Factor = 620.567

contains 37 variants

0.3549

Cluster X0246

log Bayes Factor = 121.08

contains 5 variants

0.2912

Cluster X0019

log Bayes Factor = 372.36

contains 16 variants

0.2718

Cluster X0257

log Bayes Factor = 281.184

contains 10 variants

0.2523

Cluster X0177

log Bayes Factor = 254.872

contains 10 variants

0.2453

Cluster X0212

log Bayes Factor = 300.777

contains 10 variants

0.2185

Cluster X0058

log Bayes Factor = 183.199

contains 8 variants

0.1100

Cluster X0143

log Bayes Factor = 179.808

contains 8 variants

0.1067

Cluster X0244

log Bayes Factor = 122.647

contains 5 variants

0.0970

Cluster X0150

log Bayes Factor = 861.091

contains 26 variants

0.0540

Cluster X0253

log Bayes Factor = 331.491

contains 13 variants

0.0537

Cluster X0232

log Bayes Factor = 695.273

contains 23 variants

0.0530

The TreeWAS Database is the result of research conducted at the Oxford Big Data Institute at the University of Oxford.

This research has been conducted using the UK Biobank Resource (application number 10625). This work uses data provided by patients and collected by the NHS as part of their care and support.

This research has been conducted with the support of the Wellcome Trust (100956/Z/13/Z and 090532/Z/09/Z and 100308/Z/12/Z), the Danish National Research Foundation, Takeda, the Medical Research Council (MC_UU_12010/3), the Oak Foundation (OCAY-15-520), the National Institute for Health Research (NIHR) Oxford Biomedical Research Centre (BRC), the Wellcome Trust/Royal Society (204290/Z/16/Z) and the Li Ka Shing Foundation.

Diagnostic term associations

Hospitalization Episode Statistics (HES)

(posterior probability > 0.05)

(posterior probability > 0.05)

Hospitalization Episode Statistics (`HES`)